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Enzymes
Hits 1 - 8 of 8
ccPDB (Compilation and Creation of datasets from PDB) is designed to provide service to scientific community working in the field of function or structure annoation of proteins. This database of datasets is based on Protein Data Bank (PDB), where all datasets were derived from PDB. ccPDB have four modules; i) compilation of datasets, ii) creation of datasets, iii) web services and iv) Important links. Following is brief description of these modules. [Information of the supplier, modified]
Factual databasesResource type
http://crdd.osdd.net/raghava/ccpdb/
The Characterized Protein Database, CharProtDB, is designed and being developed as a resource of expertly curated, experimentally characterized proteins described in published literature. For each protein record in CharProtDB, storage of several data types is supported. It includes functional annotation (several instances of protein names and gene symbols) taxonomic classification, literature links, specific Gene Ontology (GO) terms and GO evidence codes, EC (Enzyme Commisssion) and TC (Transport ... [Information of the supplier]
Factual databasesResource type
http://www.jcvi.org/charprotdb/index.cgi/home
ENZYME is a repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) and it describes each type of characterized enzyme for which an EC (Enzyme Commission) number has been provided. [Information of the supplier]
Factual databasesResource type
http://enzyme.expasy.org/
No other database than ESTHER holds all alpha/beta hydrolase fold proteins together: Interpro, Prosite, Pfam, have multiple entries for subsets of this structural superfamily. A table Synthese shows the correspondance between these database entries and the subfamilies in ESTHER. The ESTHER Table is now a little to big to be usefull. Each file contains one of the 31219 non redundant proteins/genes. The tables grouped in the family table, the syntheses table or the structure table may be more usefull. The ... [Information of the supplier]
Factual databasesResource type
http://bioweb.ensam.inra.fr/ESTHER/general?what=index
5. FunTree
FunTree provides a range of data resources to detect the evolution of enzyme function within distant structurally related clusters within domain super families as determined by CATH. To access the resource enter a specific CATH superfamily code or search for a structure / sequence / function (either via a EC code or KEGG ligand / reaction ID, PDB ID or UniProtKB ID). Or browse the resource via superfamily / function / structure / metabolites & reactions via the menu on the left pannel. Further information ... [Information of the supplier]
Factual databases; Picture databasesResource type
http://www.ebi.ac.uk/thornton-srv/databases/FunTree/
Proteases are a diverse and important group of enzymes representing >2% of the human, chimpanzee, mouse and rat genomes. This group of enzymes is implicated in numerous physiological processes. The importance of proteases is illustrated by the existence of 80 different hereditary diseases due to mutations in protease genes. Furthermore, proteases have been implicated in multiple human pathologies, including vascular diseases, rheumatoid arthritis, neurodegenerative processes, and cancer. During ... [Information of the supplier]
Factual databasesResource type
http://degradome.uniovi.es/
This internet database integrates information on sequence and structure of cytochrome P450 monooxygenases to facilitate protein engineering. We acknowledge your comments or contribution to this page: please send us information to be included in this database. [Information of the supplier]
Factual databasesResource type
http://www.cyped.uni-stuttgart.de/
8. Polbase
Polbase(R) is an open repository of DNA polymerase information. The goals are: a) Provide a free and open information resource focused on DNA polymerases; b) Extract primary results from published and unpublished sources; c) Present results in context, without editorial bias, verified by authors; d) Create a polymerase-centric information hub by connecting with other protein resources (PubMed, PDB, UniProt, etc.); e) Be responsive to community suggestions; f) Remain current by automatically identifying ... [Information of the supplier]
Factual databasesResource type
http://polbase.neb.com/
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