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PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables. These Web pages contain information on PHYLIP and ways to transfer the executables, source code and documentation to your computer. [Information of the supplier, modified]
evolution.genetics.washington.edu/phylip.html
The primary goal of computational molecular biology, like molecular biology itself, is to understand the meaning of the genomic information and how this information is expressed. We are interested in the problems of predicting biological function of genes and gene products from their primary sequence and ... [Information of the supplier]
brutlag.stanford.edu/
Bioinformatics is devoted to advancing the scientific understanding of living systems through computation. The Bioinformatics and Biological Computing Unit promotes and supports the adoption, use, and development of bioinformatics tools for advancing biological research. The BBCU server is dedicated to ... [Information of the supplier, modified]
bip.weizmann.ac.il/toolbox/overview.html
4. BioPerl
Bioperl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task. The collection of modules in the bioperl-live repository consist of the core of the functionality of bioperl. ... [Information of the supplier]
www.bioperl.org/wiki/Main_Page
Work on the DELTA Euphorbiaceae key started in 2002 as a one-year undergraduate project. The generic descriptions in Genera Euphorbiacearum, comprising Centroplacaceae, Euphorbiaceae senu stricto, Pandaceae, Phyllanthaceae, Picrodendraceae, and Putranjivaceae, were digitised and further standardised. ... [Information of the supplier]
malpighiales.myspecies.info/.../interactive-key-genera-euphorbiaceae-sl-salicaceae-achariaceae
The DELTA format (DEscription Language for TAxonomy) is a flexible method for encoding taxonomic descriptions for computer processing. It has been adopted by the International Taxonomic Databases Working Group (TDWG) as a standard for data exchange. DELTA-format data can be used to produce natural-langua... [Information of the supplier]
freedelta.sourceforge.net/
The Molecular Genetics Explorer is a BioQUEST software simulation that integrates genetics, biochemistry, and molecular biology to study a biological phenomenon. It is designed to show students the connections between these three key disciplines of modern molecular genetics. It is based on "Botstein's Triangle". [Information of the supplier]
aipotu.umb.edu/
Brownie is a program for analyzing rates of continuous character evolution and looking for substantial rate differences in different parts of a tree using likelihood ratio tests and Akaike Information Criterion (AIC) statistics. A manuscript describing the method appears in the May 2006 issue of Evolution. [Information of the supplier]
www.brianomeara.info/brownie/
9. Folding@home
Our goal: to understand protein folding, misfolding, and related diseases. Proteins are biology's workhorses -- its "nanomachines." Before proteins can carry out these important functions, they assemble themselves, or "fold." The process of protein folding, while critical and fundamental to virtually all ... [Information of the supplier, modified]
folding.stanford.edu/
B-VegAna (Vegetation edition and Analysis) is an integrated software package oriented towards the storage, management and analysis of ecological data. The package consists of several programs which can be run independently. It includes ten applications (Fagus, Quercus, Ginkgo, Yucca, Zamia, Taxus, ... [Information of the supplier, modified]
biodiver.bio.ub.es/veganaweb/
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