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Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., ... [Information of the supplier]
www.ebi.ac.uk/chebi/
The Jena Library of Biological Macromolecules (JenaLib) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis. It provides access to all structure entries deposited at the Protein Data Bank (PDB) or at the Nucleic Acid ... [Information of the supplier]
jenalib.fli-leibniz.de/
3. Interpro
InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. [Information of the supplier]
www.ebi.ac.uk/interpro/
The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. The Summary page describing a given peptidase can be reached by use of an index under its Name, MEROPS Identifier or source Organism. The Summary ... [Information of the supplier]
merops.sanger.ac.uk/
The Molecular Modeling Database (MMDB) contains 3D macromolecular structures, including proteins and polynucleotides. MMDB contains over 28,000 structures and is linked to the rest of the NCBI databases, including sequences, bibliographic citations, taxonomic classifications, and sequence and structure neighbors. [Information of the supplier]
www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Structure
MPtopo is a curated database of membrane proteins with experimentally validated transmembrane (TM) segments. The database is maintained in SQL form using the MySQL server. It can be searched using MPtopoQuerier, a java applet developed for this purpose. Retrieved sequences can be examined automatically ... [Information of the supplier, modified]
blanco.biomol.uci.edu/mptopo/
The Nuclear Protein Database (NPD) is a searchable database of information on proteins that are localised to the nucleus of vertebrate cells. The NPD contains information on >1000 vertebrate proteins (mainly those from mouse and human) that are thought to, or known to, be localised to the cell nucleus. ... [Information of the supplier]
npd.hgu.mrc.ac.uk/
8. Pfam
Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains and families. For each family in Pfam you can: Look at multiple alignments, View protein domain architectures, Examine species distribution, Follow links to other databases, View known ... [Information of the supplier]
pfam.sanger.ac.uk/
9. PRINTS
PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they ... [Information of the supplier]
www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/
The RCSB PDB provides a variety of tools and resources for studying the structures of biological macromolecules and their relationships to sequence, function, and disease. The RCSB is a member of the wwPDB whose mission is to ensure that the PDB archive remains an international resource with uniform data. [Information of the supplier]
www.rcsb.org/pdb/
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