The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental factors in ArrayExpress. The ontology has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository and ArrayExpress. ... [Information of the supplier]
The www.bio-protocol.org aims to provide life science researchers with a comprehensive collection of experimental protocols free of charge. Each protocol published on our website bears high standards in quality and provides accurate and detailed guidance which allows even rookie researchers to easily repeat experiments. Contribution to www.bio-protocol.org is by invitation only – we believe this is imperative to maintain the quality of our protocols. The invitations are issued by our editorial board to experts from elite universities and research institutions. The invited authors can only contribute protocols that he or she has personally carried out with success. ... [Information of the supplier]
SALVIAS TaxonScrubber is a stand-alone application for automated standardization of taxonomic names. In addition to removing spelling errors in species names, TaxonScrubber splits concatenated information into separate fields, and can be used to restructure flat-file specimen data prior to importing to a relational database. Although designed primarily for standardizing inventory data for the SALVIAS plots database, TaxonScrubber can be used whenever large numbers of taxonomic records need to be error-checked and reformated. ... [Information of the supplier]
The modularized Diversity Workbench (=DWB) represents a virtual research environment for multiple scientific purposes with regard to management and analysis of life sciences data. The framework is appropriate to store different kinds of bio- and geodiversity data and facilitates the processing of ecological, molecular biological, observational, collection and taxonomic data. It is capable and flexible enough to be applied as data storage unit for institutional data repositories. The DWB is set up on a xml-enabled relational database system. Clients of every database of the Workbench are used as stand-alone applications and provide supporting functions to clients of corresponding databases. This results in a high flexibility with regard to the conceptual design, enabling sophisticated user administration and a rapid setup of project-specific and user-adapted entry forms. Further, it facilitates the dynamic integration of web services and external data resources. The DWB is work in progress, aiming at developing a set of information models and application components that collaborate through agreed software interfaces. That is, each component of the Workbench applications uses services from other applications, but at the same time does not need to know about the internal design and implementation of them (encapsulation principle). The goal is increased reuse and collaboration across project and national borders. ... [Information of the supplier]
