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miRNEST is a comprehensive collection of animal, plant and virus microRNA data. The database provides you with 9980 miRNA candidates from 420 animal and plant species predicted in Expressed Sequence Tags, predicted targets for plant candidates, RNA-seq reads mapped to candidates from 29 species, and ... [Information of the supplier]
lemur.amu.edu.pl/share/php/mirnest/
The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray ... [Information of the supplier]
greengenes.lbl.gov/
Welcome to the Znosko Lab RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database! This tool allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin ... [Information of the supplier]
cossmos.slu.edu/
JASPAR is a collection of transcription factor DNA-binding preferences, modeled as matrices. These can be converted into Position Weight Matrices (PWMs or PSSMs), used for scanning genomic sequences. JASPAR is the only database with this scope where the data can be used with no restrictions (open-source)... [Information of the supplier]
jaspar.genereg.net/
Synthetic biology has gained much attention since Craig Venter and his team in 2010 made the historic announcement of the creation of first fully functioning, reproducing cell controlled by synthetic DNA. The 2013 NCMLS New Frontiers symposium - a joint venture between the Radboud University Medical & ... [Information of the supplier]
ncmls.nl/symposia/new-frontiers-2013/
In bacteria, small (~30-500 nt) non-coding RNAs (sRNAs) are the most abundant class of post-transcriptional regulators that are involved in diverse processes including quorum sensing, stress response, virulence and carbon metabolism. Based on the target molecules, sRNAs can be divided into two major ... [Information of the supplier]
kwanlab.bio.cuhk.edu.hk/BSRD/
The Protist Ribosomal Reference Database provides an access to unicellular eukaryotes Small SubUnit rRNA and rDNA sequences with curated taxonomy. The database is focused on nuclear-encoded sequences of protists. However, Metazoa, land plants and macrosporic fungi, as well as eukaryotic organelles ... [Information of the supplier]
ssu-rrna.org/
LncBase hosts elaborated information for, both predicted and experimentally verified, miRNA-lncRNA interactions. The database consists of two distinct modules. The Experimental Module contains detailed information for more than 5,000 interactions, between 2,958 lncRNAs and 120 miRNAs, ranging from miRNA ... [Information of the supplier]
diana.imis.athena-innovation.gr/DianaTools/index.php?r=lncBase/index
In animals, RNA binding proteins (RBPs) and microRNAs (miRNAs) post-transcriptionally regulate the expression of virtually all genes by binding to RNA. Recent advances in experimental and computational methods facilitate transcriptome-wide mapping of these interactions. It is thought that the combinatori... [Miscellaneous as indicated]
dorina.mdc-berlin.de/rbp_browser/dorina.html
YM500 is an Integrative small RNA Sequencing (smRNA-seq) database for miRNA research and provides an integrative web interface for miRNA quantification (for known miRNAs in the miRBase R19), isomiR identification (incl. RNA editing), arm switching discovery, and, most of all, novel miRNA predictions. [Information of the supplier]
ngs.ym.edu.tw/ym500/
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