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The plant snoRNA Database and web-site brings together information from three independent computer-assisted searches of the Arabidopsis genome for box C/D snoRNA genes and from studies of ncRNAs. To date, the Arabidopsis box C/D snoRNAs have been used to identify approximately 250 genes from different ... [Information of the supplier]
bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home
The Ribosomal Database Project (RDP) provides ribosome related data services to the scientific community, including online data analysis, rRNA derived phylogenetic trees, and aligned and annotated rRNA sequences. [Information of the supplier]
rdp.cme.msu.edu/
snoRNA-LBME-db includes profiles of more than 350 human snoRNAs, with descriptions of the molecule and data on sequence, size and target. Data is accessible for searching and browsing. [Editorial staff vifabio]
www-snorna.biotoul.fr/
The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with ... [Information of the supplier]
microrna.sanger.ac.uk/sequences/
The Allen Brain Atlas (ABA) is an interactive, genome-wide image database of gene expression in the mouse brain. A combination of RNA in situ hybridization data, detailed Reference Atlases and informatics analysis tools are integrated to provide a searchable digital atlas of gene expression. Together, ... [Information of the supplier]
www.brain-map.org/
JASPAR is a collection of transcription factor DNA-binding preferences, modeled as matrices. These can be converted into Position Weight Matrices (PWMs or PSSMs), used for scanning genomic sequences. JASPAR is the only database with this scope where the data can be used with no restrictions (open-source)... [Information of the supplier]
jaspar.genereg.net/
Welcome to the SILVA rRNA database project, a comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data, free for academic use. SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ... [Information of the supplier]
www.arb-silva.de/
The Database for Aligned Ribosomal Complexes (DARC) site provides a resource for directly comparing the structures of available ribosomal complexes. The site offers a collection of files deposited in the RCSB protein data bank and the Electron Microscopy Data Bank, which have been aligned so as to make ... [Information of the supplier]
darcsite.genzentrum.lmu.de/
This database aims to be useful to anyone investigating the role of microRNAs in shaping plant development, organ formation and response to different biotic and abiotic stresses. To start exploring the database just press the 'Browse Atlas' button or search for a particular microRNA record by typing at ... [Information of the supplier]
comgen.pl/mirex/
miRNEST is a comprehensive collection of animal, plant and virus microRNA data. The database provides you with 9980 miRNA candidates from 420 animal and plant species predicted in Expressed Sequence Tags, predicted targets for plant candidates, RNA-seq reads mapped to candidates from 29 species, and ... [Information of the supplier]
lemur.amu.edu.pl/share/php/mirnest/
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