The intention of the GoldenGATE editor is to build a bridge between NLP components and XML markup of natural language text according to arbitrary XML schemas. It allows the deployment of NLP components to marking up the bodies of literature they were designed for. In this way, it enables transforming the texts into XML content according to an XML schema that was designed to gain maximum benefit from the knowledge provided in them. The GoldenGATE editor picks up the ideas of plug-in processing resources and pipelined processing implemented in the GATE framework (http://www.gate.co.uk), which has been widely used in many areas of NLP research. At the same time, it provides a full XML editor including assistance for manipulation of both text and markup, thus allowing users to improve data quality by manual intervention. In order to achieve maximum flexibility and extensibility, the GoldenGATE editor provides plug-and-play interfaces on many levels: Individual automated components for markup creation and manipulation, entire groups of functionalities, components accessing documents in arbitrary storage locations, and arbitrary document data formats. ... [Information of the supplier]
The goal of the National Center for Biomedical Ontology is to support biomedical researchers in their knowledge-intensive work, by providing online tools and a Web portal enabling them to access, review, and integrate disparate ontological resources in all aspects of biomedical investigation and clinical practice. A major focus of our work involves the use of biomedical ontologies to aid in the management and analysis of data derived from complex experiments. ... [Information of the supplier]
BioPortal is a Web-based application for accessing and sharing ontologies. BioPortal provides functionality to browse and search across all ontologies, supports views/slims/value sets and mappings between ontologies. [Information of the supplier]
uBio is an initiative within the science library community to join international efforts to create and utilize a comprehensive and collaborative catalog of names of all living (and once-living) organisms. The Taxonomic Name Server (TNS) catalogs names and classifications to enable tools that can help users find information on living things using any of the names that may be related to an organism. (...) uBio provides access to the Taxonomic Name Service via SOAP. SOAP allows users to access uBio data as if it were a local resource. For example, a library may have a database of fish pictures it serves. Users may query by name to find pictures. The developer of this system could use NameBank to access additional names that can be used to ensure than name queries find the pictures even if the name wasn't originally attached to the picture. ... [Information of the supplier]
GEMET, the GEneral Multilingual Environmental Thesaurus, has been developed as an indexing, retrieval and control tool for the European Topic Centre on Catalogue of Data Sources (ETC/CDS) and the European Environment Agency (EEA), Copenhagen. The work has been carried out through a contract between the EEA and the ETC/CDS which is led by the Ministry of the Environment of Lower Saxony, includes members of Germany, Austria, Italy, Sweden and benefits of the collaboration of other member countries of the European Union (EU), as well as of UNEP Infoterra. The basic idea for the development of GEMET was to use the best of the presently available excellent multilingual thesauri, in order to save time, energy and funds. GEMET was conceived as a "general" thesaurus, aimed to define a common general language, a core of general terminology for the environment. Specific thesauri and descriptor systems (e.g. on Nature Conservation, on Wastes, on Energy, etc.) have been excluded from the first step of development of the thesaurus and have been taken into account only for their structure and upper level terminology. The resulting 6.562 terms have been arranged in a classification scheme made of 3 super-groups, 30 groups plus 5 accessory, instrumental groups. Each descriptor has been arranged in a hierarchical structure headed by a Top Term. The level of poly-hierarchy, i.e. the allocation of a descriptor to more than one group, has been kept to a minimum. Further, to allow a thematic retrieval of terms thematically related but scattered in different groups, a set of 40 themes have been agreed upon with the EEA and each descriptor has been assigned to as many themes as necessary. Thus, the user can access the thesaurus through the group-hierarchical list, through the thematic list or through the alphabetical list. GEMET follows the ISO norms on monolingual and multilingual thesauri. ... [Information of the supplier]
The Semantic Network Service (SNS) of the Federal Environment Agency provides support for all questions concerning environmental terms including the common place names. SNS contains a bi-lingual (German/English) semantic network which consists of three components.: (1) the Environmental Thesaurus UmThes® with its 33,759 inter-networked terms. UmThes® also is the German source of the European GEneral Multilingual Environmental Thesaurus (GEMET) (19 languages); (2) the Geo-Thesaurus-Environment (GTU) with 18,931 geographic names and the spatial intersections of all these places; (3) an Environmental Chronology of current or historical events that affected the environment. ... [Information of the supplier]
The 1994 CBE (Council of Biology Editors) manual, Scientific Style and Format, describes two systems of documentation, the citation-sequence system and the name-year system. This handout provides guidelines for each system. (For a class paper, check to see if your instructor prefers one of these systems or another. For a journal article, check the journal's instructions to authors to find out which system to use.) The CBE manual specifies that journal titles should be abbreviated, and it provides rules for abbreviation and a list of standard abbreviations of words commonly used in titles. Although this handout focuses on documentation style, you should be aware that the manual also contains information on many other aspects of scientific style, from prose style to handling of numbers, tables and figures, and conventions in a variety of scientific areas. ... [Information of the supplier]
The Global Names Index is the first component of a semantic environment for biology called the Global Names Architecture GNA). GNI has been developed by the Global Biodiversity Information Facility and the Encyclopedia of Life. It has benefited from the ideas of an array of gifted and enthusiastic individuals who contributed through the Nomina workshops that they attended. GNI was developed because of the central importance of the names of organisms in the management of data about organisms. The primary users of this site are not people, but other machines, so please don’t complain because the site is boring. ... [Information of the supplier]
The Global Names Architecture (GNA) is a system of databases, programs, and web services - a cyberinfrastructure - that can be used to discover, index, organize and interconnect on-line information about organisms and their names. When a thing has a name, that name becomes an anchor around which we can collect our observations and knowledge. The use of names as a framework for knowledge of biology began with the system of scientific names introduced by Linnaeus about 250 years ago. His approach was to use latin binomials, such as Ba humbugi (it's a snail), Pompholyxophrys punicea (a microbe) or Homo sapiens (a self-aware biped). This system is still used for almost all organisms. Names are included in almost every statement and database about organisms. In the e-world, names are metadata which can be used to discover and organize information about organisms. The Global Names Architecture is a communal open environment that manages names so that we can manage information about organisms and serve the needs of biologists. ... [Information of the supplier]
The objective of the working group is to foster accessibility of existing and emerging biological collection data banks at the international level by developing proposals for data and metadata standards. The groups long-term objectives:a) Foment standardization of the terminology used to model biological collection information, b) Collect and make public documents providing standards used in - or of potential use for - biological collections and c) Contribute to a general format for data exchange and retrieval for biological collections. ... [Information of the supplier]
