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1. JSim
JSim is a Java-based simulation system for building quantitative numeric models and analyzing them with respect to experimental reference data. JSim's primary focus is in physiology and biomedicine, however its computational engine is quite general and applicable to a wide range of scientific domains. ... [Information of the supplier]
physiome.org/jsim/
Omics studies, such as those of genomics, transcriptomics, proteomics, epigenomics and metabolomics, have accumulated a large volume of biomedical data. However, the promise to translate these “big data” into biomedical knowledge can be realized only if they are standardized to be interoperable, complete ... [Information of the supplier]
biocuration2015.big.ac.cn/
One of the main objectives of the HBP is to create and operate six Information and Communications Technology (ICT) Platforms, which are the core of the emerging HBP research infrastructure for brain research. Starting 30 March 2016, the scientific community worldwide can begin exploring the initial ... [Information of the supplier, modified]
https://www.humanbrainproject.eu/platforms-overview
CourseWare gives students an interesting simulator, with preset scenarios and a homework assignment as a jumping-off place, and lets them explore to build intuitive understanding, in order to "make the math an experience". Ready-to-use simulators include fractals, Lovelock's DaisyWorld, forest succession ... [Information of the supplier]
www.gingerbooth.com/courseware/index.html
PHYLIP is a free package of programs for inferring phylogenies. It is distributed as source code, documentation files, and a number of different types of executables. These Web pages contain information on PHYLIP and ways to transfer the executables, source code and documentation to your computer. [Information of the supplier, modified]
evolution.genetics.washington.edu/phylip.html
The twin goals of the MSU Digital Evolution Laboratory are to experimentally study digital organisms to improve our understanding of how natural evolution works, and then to apply this knowledge to solving computational problems. Much of the work in the Devolab is centered on research with and the ... [Information of the supplier, modified]
devolab.cse.msu.edu/
The Register of Ecological Models (REM) is a meta-database for existing mathematical models in ecology. The ECOBAS project provides a system for documentation of mathematical descriptions of ecological processes. [Information of the supplier]
ecobas.org/
The CellML language is based on the XML markup language- a computer language made for illustrating modell structures. CellML is being developed by the Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based ... [Information of the supplier]
www.cellml.org/
NRCAM, the National Resource for Cell Analysis and Modeling is developing a unique software modeling environment, the Virtual Cell, for quantitative cell biological research. Approaches in computational cell biology are coupled with high resolution light microscopy to facilitate the interplay between ... [Information of the supplier]
www.vcell.org/
The International Society for Ecological Modelling (ISEM) promotes the international exchange of ideas, scientific results, and general knowledge in the area of the application of systems analysis and simulation in ecology and natural resource management. The Society was formed in Denmark in 1975, and ... [Information of the supplier]
www.isemna.org/
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