GONUTS is a Gene Ontology Normal Usage Tracking System. The GONUTS wiki has been set up to provide third-party documentation for users of the Gene Ontology Project. The GO wiki is not an official product of the GO consortium. It was built by users at TAMU for newcomers to GO who want to explore GO usage. The rationale for this wiki is described in "About GONUTS". To enter the ontology pages, go to the GO page, or search for a term. For more information about how this wiki is automatically updated, see GO wiki scripts. For Help using the system, see Help: Contents, which is available in the navigation links from all pages. See Current events for what's new with the GONUTS wiki. Leave comments and suggestions on our Known Issues page. ... [Information of the supplier]
In the 50 years since RNA was identified as a central component in the flow of genetic information, it has become increasingly clear that RNA is more than a mere messenger and performs many diverse and interesting functions. This symposium will explore the diverse, dynamic and multifaceted roles of RNA across a spectrum of cellular processes. Yet, framed in interdisciplinary discussion of the roles of non-coding RNAs with the aim of enhancing our understanding of gene regulation and function. Topics will include recent discoveries in the fields of prokaryotic and eukaryotic long and short non-coding RNAs. Collectively aiming to further understand the noncoding RNA transcriptional and regulatory landscape. ... [Information of the supplier, modified]
Volunteers from the general public working together with researchers to advance personal genomics. We believe individuals from the general public have a vital role to play in making personal genomes useful. We are recruiting volunteers who are willing to share their genome sequence and many types of personal information with the research community and the general public, so that together we will be better able to advance our understanding of genetic and environmental contributions to human traits. Learn more about how to participate in the Personal Genome Project. ... [Information of the supplier]
Bgee is a database to retrieve and compare gene expression patterns between animal species. Bgee first maps heterogeneous expression data (currently EST, Affymetrix, and in situ hybridization data) on anatomy and development of different species. Then, in order to perform automated cross species comparisons, homology relationships across anatomies, and comparison criteria between developmental stages, are designed. Data can be retrieved by ontology browsing, textual search, expression search, or advanced expression search. Gene expression patterns can be compared by selecting any gene family (e.g. ENSFM00500000270089). The full content of the Bgee expression database, the ontologies, the homology links between anatomical ontologies, and the relationships between developmental ontologies, are all available in the download section. More information is provided in the documentation. All data sources used in Bgee are listed on the data sources page. ... [Information of the supplier]
DNAtraffic database is dedicated to be an unique comprehensive and richly annotated database of genome dynamics during the cell life. DNAtraffic contains extensive data on the nomenclature, ontology, structure and function of proteins related to control of the DNA integrity mechanisms such as chromatin remodeling, DNA repair and damage response pathways from eight model organisms commonly used in the DNA-related study: Homo sapiens (human), Mus musculus (mouse), Drosophila melanogaster (fruit fly), Caenorhabditis elegans (nematode), Saccharomyces cerevisiae (budding yeast), Schizosaccharomyces pombe (fission yeast), Escherichia coli K-12, Arabidopsis thaliana (mouse-ear cress) DNAtraffic contains comprehensive information on diseases related to the assembled human proteins. Database is richly annotated in the systemic information on the nomenclature, chemistry and structure of the DNA damage and drugs targeting nucleic acids and/or proteins involved in the maintenance of genome stability. One of the DNAtraffic database aim is to create the first platform of the combinatorial complexity of DNA metabolism pathway analysis. Database includes illustrations of pathway, damage, protein and drug. Since DNAtraffic is designed to cover a broad spectrum of scientific disciplines it has to be extensively linked to numerous external data sources. Database represents the result of the manual annotation work aimed at making the DNAtraffic database much more useful for a wide range of systems biology applications. DNAtraffic database is freely available and can be queried by the name of DNA network process, DNA damage, protein, disease, and drug. ... [Information of the supplier]
OGEE is an Online GEne Essentiality database. It contains genes that were tested experimentally for essentiality and their features; it also provides a set of tools to systematically explore and analysis these data. The main purpose of this project is to better understand gene essentiality by facilitating the comparisons of the differences and similarities between essential and non-essential genes. ... [Information of the supplier]
caArray is an open-source, web and programmatically accessible array data management system. caArray guides the annotation and exchange of array data using a federated model of local installations whose results are shareable across the cancer Biomedical Informatics Grid (caBIG™). caArray furthers translational cancer research through acquisition, dissemination and aggregation of semantically interoperable array data to support subsequent analysis by tools and services on and off the Grid. As array technology advances and matures, caArray will extend its logical library of assay management. ... [Information of the supplier]
PomBase is a new model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation. PomBase also provides a community hub for researchers, providing genome statistics, a community curation interface, news, events, documentation and mailing lists. ... [Information of the supplier]
Polbase(R) is an open repository of DNA polymerase information. The goals are: a) Provide a free and open information resource focused on DNA polymerases; b) Extract primary results from published and unpublished sources; c) Present results in context, without editorial bias, verified by authors; d) Create a polymerase-centric information hub by connecting with other protein resources (PubMed, PDB, UniProt, etc.); e) Be responsive to community suggestions; f) Remain current by automatically identifying newly published papers; g) Sustainability! By engaging the polymerase research community we can produce a valuable resource with minimal effort from any individual contributor The DNA Polymerase Database (Polbase) is intended to compile the wealth of existing DNA Polymerase information from public and private records into an open, searchable database. It supplements existing resources: a) PubMed; b) ExPASy; c) UniProtKB; d) RCSB PDB; e) KEGG; f) PROSITE; g) BRENDA; h) Human Polymerase Gamma Mutation Database. ... [Information of the supplier]
This web portal is dedicated to putatively active LINE-1 elements. L1Base is a dedicated database containing putatively active LINE-1 (L1) insertions residing in human and rodent genomes: a) intact in the two ORFs, full length L1s (FLI-L1s) and b) L1s with intact ORF2 but disrupted ORF1 (ORF2-L1s). In addition, due to their regulatory potential, the full length (>6000bp) non-intact L1s (FLnI-L1s) were also included in the database. ... [Information of the supplier]