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The EBI provides access to many different types of biological databases. The following is a brief summary of the types of databases available and the tools which can be used to query these database for various biological data. [Information of the supplier]
www.ebi.ac.uk/Databases/service.html
The Jena Library of Biological Macromolecules (JenaLib) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis. It provides access to all structure entries deposited at the Protein Data Bank (PDB) or at the Nucleic Acid ... [Information of the supplier]
jenalib.fli-leibniz.de/
The Biomolecular Structure and Modelling group brings together groups which derive protein structural information using crystallography or NMR, those who manage databases of structural information and analysts and modellers who examine these structures to derive principles of protein folding. [Information of the supplier]
www.biochem.ucl.ac.uk/bsm/
The CrossFire Beilstein database is the world's largest compilation of chemical facts. As the cornerstone database to organic chemistry, the CrossFire Beilstein database is essential for generating new leads, planning synthetic routes (including starting materials and intermediates), determining ... [Information of the supplier]
info.crossfiredatabases.com/
The Biological Macromolecule Crystallization Database (BMCD) contains crystal data and the crystallization conditions, which have been compiled from literature. The current version of the BMCD includes 5247 crystal entries from macromolecules for which diffraction quality crystals have been obtained. ... [Information of the supplier]
xpdb.nist.gov:8060/BMCD4/
Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., ... [Information of the supplier]
www.ebi.ac.uk/chebi/
InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. [Information of the supplier]
www.ebi.ac.uk/interpro/
The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. The Summary page describing a given peptidase can be reached by use of an index under its Name, MEROPS Identifier or source Organism. The Summary ... [Information of the supplier]
merops.sanger.ac.uk/
The Molecular Modeling Database (MMDB) contains 3D macromolecular structures, including proteins and polynucleotides. MMDB contains over 28,000 structures and is linked to the rest of the NCBI databases, including sequences, bibliographic citations, taxonomic classifications, and sequence and structure neighbors. [Information of the supplier]
www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Structure
MPtopo is a curated database of membrane proteins with experimentally validated transmembrane (TM) segments. The database is maintained in SQL form using the MySQL server. It can be searched using MPtopoQuerier, a java applet developed for this purpose. Retrieved sequences can be examined automatically ... [Information of the supplier, modified]
blanco.biomol.uci.edu/mptopo/
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