The Jena Library of Biological Macromolecules (JenaLib) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis. It provides access to all structure entries deposited at the Protein Data Bank (PDB) or at the Nucleic Acid Database (NDB). In addition, basic information on the architecture of biopolymer structures is available. The JenaLib intends to fulfill both scientific and educational needs. ... [Information of the supplier]
The mission of the IPK Gatersleben, a Leibniz Institute, is to conduct basic and applied research in the area of plant genetics and crop plant research. The results of this work are not only of significant benefit to plant breeders and the agricultural industry, but also to the food, feed, and chemical industry. An additional research area, the use of renewable raw materials, is increasingly gaining in importance. ... [Information of the supplier]
SRS (sequence retrieval system) is one of the most powerful data browsing/retrieval tools available. SRS provides rapid, easy and user friendly access to the large volumes of diverse and heterogeneous Life Science data stored in more than 400 internal and public domain databases. It can be used to browse the various biological sequence and literature databases the EBI has available. ... [Information of the supplier]
BioMagResBank (BMRB) is the publicly-accessible depository for NMR results from peptides, proteins, and nucleic acids recognized by the International Society of Magnetic Resonance and by the IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. In addition, BMRB provides reference information and maintains a collection of NMR pulse sequences and computer software for biomolecular NMR. Access to data in BMRB is free directly from its web site (URL http://www.bmrb.wisc.edu) and ftp site (ftp.bmrb.wisc.edu) and will remain so as public funding permits. The concept of a biomolecular NMR data bank was developed under a five-year research grant awarded to the University of Wisconsin-Madison from the National Library of Medicine, National Institutes of Health. ... [Information of the supplier]
The EMBL Nucleotide Sequence Database (also known as EMBL-Bank) constitutes Europe's primary nucleotide sequence resource. Main sources for DNA and RNA sequences are direct submissions from individual researchers, genome sequencing projects and patent applications. The database is produced in an international collaboration with GenBank (USA) and the DNA Database of Japan (DDBJ). Each of the three groups collects a portion of the total sequence data reported worldwide, and all new and updated database entries are exchanged between the groups on a daily basis. The current database release (Release 87, June 2006), with according Release notes and user manual are available from the EBI servers. ... [Information of the supplier]
The Entrez Nucleotides database is a collection of sequences from several sources, including GenBank, RefSeq, and PDB. The number of bases in these databases continues to grow at an exponential rate. As of April 2006, there are over 130 billion bases in GenBank and RefSeq alone. [Information of the supplier]
A grand challenge in the post-genomic era is a complete computer representation of the cell, the organism, and the biosphere, which will enable computational prediction of higher-level complexity of cellular processes and organism behaviors from genomic and molecular information. Towards this end we have been developing a bioinformatics resource named KEGG as part of the research projects of the Kanehisa Laboratories in the Bioinformatics Center of Kyoto University and the Human Genome Center of the University of Tokyo. (...) KEGG is a suite of databases and associated software, integrating our current knowledge on the function and utility of biological systems (PATHWAY and BRITE databases), the information about the universe of genes and proteins (GENES database), and the information about the universe of chemical compounds and reactions (LIGAND database). ... [Information of the supplier]
The Molecular Modeling Database (MMDB) contains 3D macromolecular structures, including proteins and polynucleotides. MMDB contains over 28,000 structures and is linked to the rest of the NCBI databases, including sequences, bibliographic citations, taxonomic classifications, and sequence and structure neighbors. [Information of the supplier]
NONCODE is a database of all kinds of noncoding RNAs (except tRNAs and rRNAs). It is distinguished from other ncRNA databases by: 1. The data amount of NONCODE is big, and almost all traditional ncRNA classes are included. 2. All the sequences are confirmed by consulting the references manually, more than 80% data are from experiments. 3. We introduced a new classification system -- process function classification system, which based on the cellular process it takes part in. 4. NONCODE also provides an efficient search option, allowing recovery of sequence, related publications and other information. Now it contains 5,339 public sequences from 861 organisms covering all kingdoms of life, including vira and viroids. ... [Information of the supplier]
RNAi Database provides comprehensive access to publicly available RNAi phenotypic data from the worm Caenorhabditis elegans. RNAiDB provides raw data (in the form of images and movies), annotated phenotypes, graphical gene maps, analysis of potential off-target gene inhibition, and tools for searching and mining phenotypic data. ... [Information of the supplier, modified]