BioPortal is a Web-based application for accessing and sharing ontologies. BioPortal provides functionality to browse and search across all ontologies, supports views/slims/value sets and mappings between ontologies. [Information of the supplier]
uBio is an initiative within the science library community to join international efforts to create and utilize a comprehensive and collaborative catalog of names of all living (and once-living) organisms. The Taxonomic Name Server (TNS) catalogs names and classifications to enable tools that can help users find information on living things using any of the names that may be related to an organism. (...) uBio provides access to the Taxonomic Name Service via SOAP. SOAP allows users to access uBio data as if it were a local resource. For example, a library may have a database of fish pictures it serves. Users may query by name to find pictures. The developer of this system could use NameBank to access additional names that can be used to ensure than name queries find the pictures even if the name wasn't originally attached to the picture. ... [Information of the supplier]
The Semantic Network Service (SNS) of the Federal Environment Agency provides support for all questions concerning environmental terms including the common place names. SNS contains a bi-lingual (German/English) semantic network which consists of three components.: (1) the Environmental Thesaurus UmThes® with its 33,759 inter-networked terms. UmThes® also is the German source of the European GEneral Multilingual Environmental Thesaurus (GEMET) (19 languages); (2) the Geo-Thesaurus-Environment (GTU) with 18,931 geographic names and the spatial intersections of all these places; (3) an Environmental Chronology of current or historical events that affected the environment. ... [Information of the supplier]
The Global Names Index is the first component of a semantic environment for biology called the Global Names Architecture GNA). GNI has been developed by the Global Biodiversity Information Facility and the Encyclopedia of Life. It has benefited from the ideas of an array of gifted and enthusiastic individuals who contributed through the Nomina workshops that they attended. GNI was developed because of the central importance of the names of organisms in the management of data about organisms. The primary users of this site are not people, but other machines, so please don’t complain because the site is boring. ... [Information of the supplier]
If two different species, genera or other taxons have the same name, this name is a homonym. Homonyms are illegal if they belong to the same code of nomenclature. If same name belongs to different codes, it is a hemihomonym (Starobogatov, 1991). Despite of their validity, hemihomonyms are misleading and even dangerous. If there is a possibility that a name is a hemihomonym, use postfix (b), (c) or (z) for names covered by Botanical, Bacteriological, or Zoological codes of nomenclature, respectively. To check if name is a hemihomonym, please use table below or the query with this search API prototype. ... [Information of the supplier]
BioConcepts is a multilingual database which documents the origin and definition of basic biological concepts. It serves as a guide to the first uses of words, influential definitions and shifts of meaning through history. The database started life in 2008 as a supplement to the handbook Historisches Wörterbuch der Biologie. Geschichte und Theorie der biologischen Grundbegriffe (HWB) which was published in three volumes by Verlag J.B. Metzler in 2011. BioConcepts is focused on terms of general biology, i.e. those concepts which apply to all living beings (e.g. ‘organism’, ‘evolution’, or ‘gene’); terms related to particular forms of life (e.g. ‘flower’, ‘heart’, or ‘seeing’) are for the most part not included (the exceptions to this rule refer to important concepts for wide spread phenomena like ‘sexuality’, ‘social behaviour’, or ‘symbiosis’). Currently, the database comprises approximately 8,000 quotations in about 2,000 main entries. In order to find the oldest occurrences of the words the huge corpora of digitalized texts (e.g. JSTOR or GoogleBooks) have been systematically searched. As many of the quotations have been included by students and are not yet checked and revised there are still inconsistencies and incomplete quotations in the database. They will be removed in the process of revision that is currently taking place. By mid-2015 the revision should be completed (by December 2014 entries in the categories ranging from "adaptation" to "regeneration" have been revised). You may help to improve the database by including quotations or hints to quotations in the section “Your feedback” at the end of each entry. ... [Information of the supplier]
BioMagResBank (BMRB) is the publicly-accessible depository for NMR results from peptides, proteins, and nucleic acids recognized by the International Society of Magnetic Resonance and by the IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. In addition, BMRB provides reference information and maintains a collection of NMR pulse sequences and computer software for biomolecular NMR. Access to data in BMRB is free directly from its web site (URL http://www.bmrb.wisc.edu) and ftp site (ftp.bmrb.wisc.edu) and will remain so as public funding permits. The concept of a biomolecular NMR data bank was developed under a five-year research grant awarded to the University of Wisconsin-Madison from the National Library of Medicine, National Institutes of Health. ... [Information of the supplier]
The human genome seems to encode for not more than 30,000 to 40,000 proteins. A major challenge is to understand how posttranslational events, such as glycosylation, affect the activities and functions of these proteins in health and disease. The importance of protein glycosylation is becoming widely realized through studies on protein folding, protein localization and trafficking, protein solubility, biological half-life as well as studies on cell-cell interactions. The progressing Glycomics projects will dramatically accelerate the understanding of the roles of carbohydrates in cell communication and lead to novel therapeutic approaches for treatment of human disease. The MIT's magazine of innovation (January 21 2003) has identified Glycomics as one of the top ten technologies that will change the future. To support the upcoming Glycomics projects we [German Cancer Research Center (DKFZ), Heidelberg] focus our research activities on the development of bioinformatic tools and databases for glycobiology. ... [Information of the supplier]
ZFIN serves as the zebrafish model organism database. The long term goals for ZFIN are a) to be the community database resource for the laboratory use of zebrafish, b) to develop and support integrated zebrafish genetic, genomic and developmental information, c) to maintain the definitive reference data sets of zebrafish research information, d) to link this information extensively to corresponding data in other model organism and human databases, e) to facilitate the use of zebrafish as a model for human biology and f) to serve the needs of the research community. ... [Information of the supplier]
The Structural Genomics Consortium (SGC) is a not-for-profit organization that aims to determine the three dimensional structures of proteins of medical relevance, and place them in the public domain without restriction. The SGC operates out of the Universities of Oxford and Toronto and Karolinska Institutet, Stockholm. The SGC works on structures of proteins from its Target List of ~2,000 proteins, which comprises human proteins associated with diseases such as cancer, diabetes, inflammation, and genetic diseases, as well as proteins from human parasites such as those that cause malaria. Research at the SGC is divided into three areas: structural genomics of soluble proteins, structural genomics of integral membrane proteins, and structural chemistry of soluble proteins. ... [Information of the supplier]