The intention of the GoldenGATE editor is to build a bridge between NLP components and XML markup of natural language text according to arbitrary XML schemas. It allows the deployment of NLP components to marking up the bodies of literature they were designed for. In this way, it enables transforming the texts into XML content according to an XML schema that was designed to gain maximum benefit from the knowledge provided in them. The GoldenGATE editor picks up the ideas of plug-in processing resources and pipelined processing implemented in the GATE framework (http://www.gate.co.uk), which has been widely used in many areas of NLP research. At the same time, it provides a full XML editor including assistance for manipulation of both text and markup, thus allowing users to improve data quality by manual intervention. In order to achieve maximum flexibility and extensibility, the GoldenGATE editor provides plug-and-play interfaces on many levels: Individual automated components for markup creation and manipulation, entire groups of functionalities, components accessing documents in arbitrary storage locations, and arbitrary document data formats. ... [Information of the supplier]
The goal of the National Center for Biomedical Ontology is to support biomedical researchers in their knowledge-intensive work, by providing online tools and a Web portal enabling them to access, review, and integrate disparate ontological resources in all aspects of biomedical investigation and clinical practice. A major focus of our work involves the use of biomedical ontologies to aid in the management and analysis of data derived from complex experiments. ... [Information of the supplier]
The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental factors in ArrayExpress. The ontology has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository and ArrayExpress. ... [Information of the supplier]
BioPortal is a Web-based application for accessing and sharing ontologies. BioPortal provides functionality to browse and search across all ontologies, supports views/slims/value sets and mappings between ontologies. [Information of the supplier]
This workshop aims to bring together computer scientists and biologists, working on Semantic Web approaches for biodiversity, ecology and related areas such as plant sciences, agronomy, agroecology or citizen science related to biodiversity. The goal is to exchange experiences, build a state of the art of realizations and challenges, and reuse and adapt solutions that have been proposed in other domains. The workshop focuses on presenting challenging issues and solutions for the design of high-quality biodiversity information systems leveraging Semantic Web techniques. ... [Information of the supplier]
The International Conference on Biomedical Ontologies (ICBO) is a premier annual conference series that brings together researchers, students and professionals involved in the development and application of ontologies in all areas of biology, medicine, diseases, human health, genome biology, environment, biomes, nutrition, food, plants, agriculture and others. This year, ICBO will be run jointly with Ontologies and Data for the Life Sciences (ODLS), an annual workshop series that focuses on data management and data processing in the life sciences and in health care, covering the overall spectrum of biomedical information management, from experimental data acquisition and preprocessing across analysis, structuring and interpretation of data, up to developing structured representations of knowledge, in particular in the form of ontologies, with their various applications. ICBO 2020 will be one of the headline conferences in the Bolzano Summer of Knowledge 2020, together with EKAW 2020 and FOIS 2020. The theme for ICBO|ODLS 2020 is Ontology across Boundaries. ... [Information of the supplier]
The 2022 International Conference of Biomedical Ontologies (ICBO 2022) will be held in 2022 at the University of Michigan, Ann Arbor, MI, USA. This meeting will be held in a hybrid format that includes both in-person and virtual participation and is part of the Michigan Week of Ontology and Semantic Web. [Information of the supplier]
uBio is an initiative within the science library community to join international efforts to create and utilize a comprehensive and collaborative catalog of names of all living (and once-living) organisms. The Taxonomic Name Server (TNS) catalogs names and classifications to enable tools that can help users find information on living things using any of the names that may be related to an organism. (...) uBio provides access to the Taxonomic Name Service via SOAP. SOAP allows users to access uBio data as if it were a local resource. For example, a library may have a database of fish pictures it serves. Users may query by name to find pictures. The developer of this system could use NameBank to access additional names that can be used to ensure than name queries find the pictures even if the name wasn't originally attached to the picture. ... [Information of the supplier]
GEMET, the GEneral Multilingual Environmental Thesaurus, has been developed as an indexing, retrieval and control tool for the European Topic Centre on Catalogue of Data Sources (ETC/CDS) and the European Environment Agency (EEA), Copenhagen. The work has been carried out through a contract between the EEA and the ETC/CDS which is led by the Ministry of the Environment of Lower Saxony, includes members of Germany, Austria, Italy, Sweden and benefits of the collaboration of other member countries of the European Union (EU), as well as of UNEP Infoterra. The basic idea for the development of GEMET was to use the best of the presently available excellent multilingual thesauri, in order to save time, energy and funds. GEMET was conceived as a "general" thesaurus, aimed to define a common general language, a core of general terminology for the environment. Specific thesauri and descriptor systems (e.g. on Nature Conservation, on Wastes, on Energy, etc.) have been excluded from the first step of development of the thesaurus and have been taken into account only for their structure and upper level terminology. The resulting 6.562 terms have been arranged in a classification scheme made of 3 super-groups, 30 groups plus 5 accessory, instrumental groups. Each descriptor has been arranged in a hierarchical structure headed by a Top Term. The level of poly-hierarchy, i.e. the allocation of a descriptor to more than one group, has been kept to a minimum. Further, to allow a thematic retrieval of terms thematically related but scattered in different groups, a set of 40 themes have been agreed upon with the EEA and each descriptor has been assigned to as many themes as necessary. Thus, the user can access the thesaurus through the group-hierarchical list, through the thematic list or through the alphabetical list. GEMET follows the ISO norms on monolingual and multilingual thesauri. ... [Information of the supplier]
The Semantic Network Service (SNS) of the Federal Environment Agency provides support for all questions concerning environmental terms including the common place names. SNS contains a bi-lingual (German/English) semantic network which consists of three components.: (1) the Environmental Thesaurus UmThes® with its 33,759 inter-networked terms. UmThes® also is the German source of the European GEneral Multilingual Environmental Thesaurus (GEMET) (19 languages); (2) the Geo-Thesaurus-Environment (GTU) with 18,931 geographic names and the spatial intersections of all these places; (3) an Environmental Chronology of current or historical events that affected the environment. ... [Information of the supplier]
