Detailed overview:
Title: ScerTF
Creator: Washington University / Department of Genetics / Stormo Lab
Abstract: ScerTF catalogs over 1,200 position weight matrices (PWMs) for 196 different yeast transcription factors. We've curated 11 literature sources, benchmarked the published position-specific scoring matrices against in-vivo TF occupancy data and TF deletion experiments, and combined the most accurate models to produce a single collection of the best performing weight matrices for Saccharomyces cerevisiae. ScerTF is useful for a wide range of problems, such as linking regulatory sites with transcription factors, identifying a transcription factor based on a user-input matrix, finding the genes bound/regulated by a particular TF, and finding regulatory interactions between transcription factors. Enter a TF name to find the recommended matrix for a particular TF, or enter a nucleotide sequence to identify all TFs that could bind a particular region [Information of the supplier]
Subject: Biochemical genetics in plants and microorganisms (572.82)
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Audience: Experts
Language: English
Format: website; database
Resource type: Factual databases
Access: free
Metadata update date: 2012-12-14
Metadata provider: UBFfm
URL of this vifabio-resource:
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