Detailed overview:
ScerTF
ScerTF
| Title: | ScerTF |
| Identifier: | http://stormo.wustl.edu/ScerTF/ |
| Creator: | Washington University / Department of Genetics / Stormo Lab |
| Abstract: | ScerTF catalogs over 1,200 position weight matrices (PWMs) for 196 different yeast transcription factors. We've curated 11 literature sources, benchmarked the published position-specific scoring matrices against in-vivo TF occupancy data and TF deletion experiments, and combined the most accurate models to produce a single collection of the best performing weight matrices for Saccharomyces cerevisiae. ScerTF is useful for a wide range of problems, such as linking regulatory sites with transcription factors, identifying a transcription factor based on a user-input matrix, finding the genes bound/regulated by a particular TF, and finding regulatory interactions between transcription factors. Enter a TF name to find the recommended matrix for a particular TF, or enter a nucleotide sequence to identify all TFs that could bind a particular region [Information of the supplier] |
| Subject: |
Biochemical genetics in plants and microorganisms (572.82)
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| Audience: | Experts |
| Language: | English |
| Format: | website; database |
| Resource type: | Factual databases |
| Access: | free |
| Metadata update date: | 2012-12-14 |
| Metadata provider: |
 |
| URL of this vifabio-resource: | http://www.vifabio.de/en/iqfBio/detail/7826 |
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