Detailed overview:
SNAPPI-DB
SNAPPI-DB
| Title: | SNAPPI-DB |
| Title alternative: | SNAPPIView; SNAPPI Viewer |
| Identifier: | http://www.compbio.dundee.ac.uk/SNAPPI/snappidb.jsp |
| Creator: | Barton, Geoffrey J. |
| Publisher: |
University of Dundee |
| Abstract: | SNAPPI-DB is an object-oriented database of domain-domain interactions observed in structural data. The structural data is obtained from the MSD data warehouse as the MSD provides consistent data with links to many types of data about proteins and nucleic acids. In order to increase performance and allow complex analysis with a high degree of abstraction, the relevant (and most frequently queried) data from the MSD is migrated to an object-oriented database developed using the Java Data Objects Technology (JDO). Domain-domain interactions are then determined based on atom-atom distances and the interactions stored. The domain-domain interactions are then classified by family pair and interaction interface and multiple alignments are then generated for each group. SNAPPI-DB contains: (1) Structural information on all (up to a specific date) structures held in the PDB down to the level of atom co-ordinates; (2) Protein Quaternary Structures (PQS) generated structures; (3) ... [Information of the supplier] |
| Subject: |
Proteins (572.6)
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| Audience: | Experts |
| Language: | English |
| Format: | website; database; software |
| Resource type: | Factual databases |
| Access: | free |
| Metadata update date: | 2010-02-16 |
| Metadata provider: |
 |
| URL of this vifabio-resource: | http://www.vifabio.de/en/iqfBio/detail/2089 |
| © Virtuelle Fachbibliothek Biologie (vifabio) | |