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Database Guide
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Five international partners together with the journal Systematic and Applied Microbiology (SAM) started “The All-Species Living Tree" Project (LTP) to provide a valuable resource particularly for microbial taxonomists. The aim of the project is to reconstruct separate and curated 16S and 23S rRNA ... [Information of the supplier]
www.arb-silva.de/projects/living-tree/
BioCatalogue will provide a curated and comprehensive catalogue of biological web services, thereby enabling users (people and programs) to discover and use these services easily. It also aims to provide a platform with several (standardized) interfaces and a suite of tools for registration of services ... [Information of the supplier]
www.biocatalogue.org/
BioMagResBank (BMRB) is the publicly-accessible depository for NMR results from peptides, proteins, and nucleic acids recognized by the International Society of Magnetic Resonance and by the IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid ... [Information of the supplier]
www.bmrb.wisc.edu/
4. BioPortal
BioPortal is a Web-based application for accessing and sharing ontologies. BioPortal provides functionality to browse and search across all ontologies, supports views/slims/value sets and mappings between ontologies. [Information of the supplier]
bioportal.bioontology.org/
Welcome to DAVID Bioinformatics Resources 2003 – 2009. The Database for Annotation, Visualization and Integrated Discovery (DAVID). DAVID 2008 is the sixth version of our original web-accessible programs. DAVID now provides a comprehensive set of functional annotation tools for investigators to ... [Information of the supplier, modified]
niaid.abcc.ncifcrf.gov/home.jsp
6. Dryad
Dryad is an international repository of data underlying peer-reviewed articles in the basic and applied biosciences. Dryad enables scientists to validate published findings, explore new analysis methodologies, repurpose data for research questions unanticipated by the original authors, and perform ... [Information of the supplier, modified]
datadryad.org/
The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB was founded ... [Information of the supplier]
www.ebi.ac.uk/pdbe/emdb/
Ensembl is a joint project between EMBL - European Bioinformatics Institute (EBI) and the Wellcome Trust Sanger Institute (WTSI) to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. The Ensembl project aims to provide: accurate, automatic analysis ... [Information of the supplier, modified]
www.ensembl.org/index.html
Environmental and biological research is becoming central to major societal challenges related to the Earth’s ecosystems and climate dynamics. To handle the scale and complexity of the scientific questions being addressed, there is a strong need to integrate knowledge because biological data are ... [Information of the supplier]
www.gfbio.org/
The human genome seems to encode for not more than 30,000 to 40,000 proteins. A major challenge is to understand how posttranslational events, such as glycosylation, affect the activities and functions of these proteins in health and disease. The importance of protein glycosylation is becoming widely ... [Information of the supplier]
www.glycosciences.de/sweetdb/structure/
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