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Database Guide

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ChIPBase, an integrated resource and platform for decoding transcription factor binding maps, expression profiles and transcriptional regulation of long non-coding RNAs (lncRNAs, lincRNAs), microRNAs, other ncRNAs(snoRNAs, tRNAs, snRNAs, etc.) and protein-coding genes from ChIP-Seq data. ChIPBase ... [Information of the supplier]
deepbase.sysu.edu.cn/chipbase/
dbVar is a database of genomic structural variation that allows you to search, view, and download variant data from studies submitted for any organism. In general, variants are ≥ 50 nucleotides, but are occasionally smaller. dbVar provides access to the raw data (when available) and links to other NCBI ... [Information of the supplier]
www.ncbi.nlm.nih.gov/dbvar
The Death domain (DD) superfamily is one of the largest classes of protein interaction modules and plays a pivotal role in the apoptosis, inflammation, necrosis, and immune cell signaling pathways. Critical caspase activating complexes in the apoptosis and inflammation signaling pathways are assembled ... [Information of the supplier]
deathdomain.org/
The Database of Genomic Variants archive (DGVa) is a repository that provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species. In recent years there have been unprecedented advances in the technologies that characterise genomic variation, and it ... [Information of the supplier]
www.ebi.ac.uk/dgva/
The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context. The database performs three important tasks: 1. published GWAS are collected from several ... [Information of the supplier]
distild.jensenlab.org/
DNAtraffic database is dedicated to be an unique comprehensive and richly annotated database of genome dynamics during the cell life. DNAtraffic contains extensive data on the nomenclature, ontology, structure and function of proteins related to control of the DNA integrity mechanisms such as chromatin ... [Information of the supplier]
dnatraffic.ibb.waw.pl/
No other database than ESTHER holds all alpha/beta hydrolase fold proteins together: Interpro, Prosite, Pfam, have multiple entries for subsets of this structural superfamily. A table Synthese shows the correspondance between these database entries and the subfamilies in ESTHER. The ESTHER Table is now a ... [Information of the supplier]
bioweb.ensam.inra.fr/ESTHER/general?what=index
The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. A typical workflow includes the isolation and preparation of material for sequencing, a run of a sequencing machine in which sequencing data are produced ... [Information of the supplier]
www.ebi.ac.uk/ena
The Encyclopedia of DNA Elements (ENCODE) consortium aims to identify all functional elements in the human genome sequence. These elements include genomic regions bound by transcription factors (TFs), occupied by nucleosomes, occupied by nucleosomes with modified histones, hypersensitive to cleavage of ... [Information of the supplier]
www.factorbook.org/mediawiki/index.php/Welcome_to_factorbook
hiPathDB provides two different types of integration. The pathway-level integration is a simple collection of individual pathways as described in the original database. We devised a gene-centric pathway model that could reflect different properties of four databases. The entity-level integration creates ... [Information of the supplier]
hipathdb.kobic.re.kr/
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