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The Dali server is a network service for comparing protein structures in 3D. You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank. A multiple alignment of structural neighbours is emailed back to you. In favourable cases, comparing 3D ... [Information of the supplier]
ekhidna.biocenter.helsinki.fi/dali/start
SEVENS summarizes GPCR (G-protein coupled receptor) genes that are identified with high accuracy from 56 eukaryote genomes, by a pipeline integrating such software as a gene finder, a sequence alignment tool, a motif and domain assignment tool, and a transmembrane helix predictor. This treats a larger ... [Information of the supplier]
sevens.cbrc.jp/index.php
PTMCode is a resource of known and predicted functional associations between protein posttranslational modifications (PTMs). It currently contains 13 different PTM types in proteins from 8 different eukaryotic species. A total of 137525 sites and 401688 functional associations in 25764 proteins can ... [Information of the supplier]
ptmcode.embl.de/
dcGO is a comprehensive ontology database for protein domains. Domains are often the functional units of proteins, thus instead of associating ontological terms only with full-length proteins, it sometimes makes more sense to associate terms with individual domains. Domain-centric GO, "dcGO", provides ... [Miscellaneous as indicated]
supfam.org/SUPERFAMILY/dcGO/
ModBase is a database of comparative protein structure models, calculated by our modeling pipeline ModPipe. ModBase contains theoretically calculated models, not experimentally determined structures. The models may contain significant errors. [Information of the supplier, modified]
modbase.compbio.ucsf.edu/modbase-cgi/index.cgi
This website provides a current list of membrane protein structures determined by x-ray and electron diffraction with links to the Protein Data Bank and other useful sites. Although this database emphasizes structures determined by diffraction methods, some NMR structures are included as well. [Information of the supplier, modified]
blanco.biomol.uci.edu/mpstruc/
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