NONCODE is a database of all kinds of noncoding RNAs (except tRNAs and rRNAs). It is distinguished from other ncRNA databases by: 1. The data amount of NONCODE is big, and almost all traditional ncRNA classes are included. 2. All the sequences are confirmed by consulting the references manually, more than 80% data are from experiments. 3. We introduced a new classification system -- process function classification system, which based on the cellular process it takes part in. 4. NONCODE also provides an efficient search option, allowing recovery of sequence, related publications and other information. Now it contains 5,339 public sequences from 861 organisms covering all kingdoms of life, including vira and viroids. ... [Information of the supplier]
RNAi Database provides comprehensive access to publicly available RNAi phenotypic data from the worm Caenorhabditis elegans. RNAiDB provides raw data (in the form of images and movies), annotated phenotypes, graphical gene maps, analysis of potential off-target gene inhibition, and tools for searching and mining phenotypic data. ... [Information of the supplier, modified]
Genes to Cognition (G2C) is a neuroscience research programme with the dual aim of discovering fundamental biological principles and important insights into brain disease. G2C is an international collaborative program initiated by Dr. Seth Grant and supported by the Wellcome Trust following the discovery that multiprotein complexes formed by intracellular proteins and neurotransmitter receptors were important for neuronal plasticity and behaviour. Multiprotein complexes are involved with dozens of brain diseases, control multiple types of behaviours and are involved with the responses to drug treatments of mental disorders. Evolutionary studies show ancient forms of the complexes evolved over a billion years in single cell animals and may represent the origin of the brain. The long term goal is to understand the molecular basis of the extraordinarily complex brain of humans, how this complexity evolved, what it confers on behaviour and why brain evolution made us susceptible to mental illness. The G2C project has a unique database called G2Cdb that houses data resources from the research program and G2C has a very interesting educational program called G2COnline. ... [Information of the supplier, modified]
GENATLAS contains relevant information with respect to gene mapping and genetic diseases. The database was created in 1986 by Jean Frézal. The application is developed and maintained at the Paris René Descartes University centre of bioinformatics. Three consultation's modes are available: a Full text mode, an interrogation by symbol name or id OMIM and finally a multicriteria mode. The information is collected from the literature. Data entered in GENATLAS are daily updated and immediately available online. The Website offers a Phenotype Database, a Gene Database and a Citation Database. ... [Information of the supplier, modified]
HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated loci. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can be visualized along with their predicted chromatin state in nine cell types, conservation across mammals, and their effect on regulatory motifs. HaploReg is designed for researchers developing mechanistic hypotheses of the impact of non-coding variants on clinical phenotypes and normal variation. ... [Information of the supplier]
This website is a database for Bioprojects. A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium of coordinating organizations. BioProjects aggregate pointers to data to provide users with an entry point into diverse data types. [Information of the supplier]
M phase, also called as cell division, is the most crucial and fundamental affair of the eukaryotic cell cycle. After the chromosomes have been replicated during the S phase, the sister chromatids are separated and distributed into two daughter cells equally and faithfully. Also, each daughter cell receives the almost average and necessary intracellular constituents and organelles from the mother cell. Generally, cell division consists of six stages, including prophase, prometaphase, metaphase, anaphase, telophase and cytokinesis. And the first five stages constituent mitosis. During mitosis, numerous proteins organize protein super-complexes at the three distinct regions of centrosome, kinetochore/centromere and cleavage furrow/midbody. Although many proteins have been identified to be localized on centrosome, kinetochore and/or midbody, an integrated resource on this area still remains not to be available. In this work, we have collected all proteins identified to be localized on kinetochore, centrosome, and/or midbody from two fungi (S. cerevisiae and S. pombe) and five animals, including C. elegans, D. melanogaster, X. laevis, M. musculus and H. sapiens. From the related literature of PubMed, numerous proteins have been manually curated to be localized on at least one of the sub-cellular localizations of kinetochore, centrosome and midbody. And to promise the quality of data, based on the rationale of "Seeing is believing", these proteins have been unambiguously observed under fluorescent microscope as directly supportive evidences. Then an integrated and searchable database MiCroKit - Midbody, Centrosome and Kinetochore has been established. The MiCroKit database is the first integrative resource to pin point most of identified components and related scientific information of midbody, centrosome and kinetochore. The version 1.0 of MiCroKit database was set up on Nov. 2nd, 2005, containing 1,065 unique proteins. The MiCroKit version 2.0 was released on Jun. 5th, 2006, with 1,120 entries. Currently, the MiCroKit 3.0 database was updated on July 9, 2009, containing 1,489 unique protein entries. ... [Information of the supplier, modified]
SINEBase is a database of SINEs and a toolset for their identification and analysis.Short interspersed elements (SINEs) are repetitive DNA sequences invading the genomes of eukaryotes. They can amount to more than 10% of the genome in some species but are missing from other ones. While these genomic parasites can be deleterious to the cell, the long-term being in the genome has made SINEs a valuable factor of genetic variation providing regulatory elements for gene expression, alternative splice sites, polyadenylation signals, and even functional RNA genes. ... [Information of the supplier]
AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century. The records describe publications and resources encompassing all aspects of agriculture and allied disciplines, including animal and veterinary sciences, entomology, plant sciences, forestry, aquaculture and fisheries, farming and farming systems, agricultural economics, extension and education, food and human nutrition, and earth and environmental sciences. Although the NAL Catalog (AGRICOLA) does not contain the text of the materials it cites, thousands of its records are linked to full-text documents online, with new links added daily. ... [Information of the supplier]
AlgaeBase is a database of information on algae that includes terrestrial, marine and freshwater organisms. At present, the data for the marine algae, particularly seaweeds, are the most complete. (...) AlgaeBase Literature Search offers a bibliographic database with 35,000+ titles. [Information of the supplier, modified]
