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Database Guide

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The degradation of xenobiotic and other toxic compounds by microorganisms is central to strategies for the bioremediation of contaminated environments. The Center for Microbial Ecology at Michigan State University and Rutgers University initiated a study to establish the phylogenetic distribution of ... [Information of the supplier, modified]
hiPathDB provides two different types of integration. The pathway-level integration is a simple collection of individual pathways as described in the original database. We devised a gene-centric pathway model that could reflect different properties of four databases. The entity-level integration creates ... [Information of the supplier]
The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. The database ... [Information of the supplier]
Sequencing of the human genome has opened the way and provided the impetus for building a comprehensive picture of a mammalian cell. Significant efforts are underway in the fields of genomics and proteomics to identify all genes and proteins in a given organism. The goal is a complete map of the genes, ... [Information of the supplier]
MeRy-B is a plant metabolomics platform allowing the storage and visualisation of Nuclear Magnetic Resonance (NMR) metabolic profiles from plants. For data uploading contact the administrator. MeRy-B is a web-based application with either public or private access. It is designed to fill a knowledgebase ... [Information of the supplier]
MMMDB 1.2 is a freely available metabolomic database containing a collection of metabolites measured from multiple tissues from single mice. The datasets are collected using a single instrument and not integrated from literatures, which is useful for capturing the holistic overview of large metabolomic ... [Information of the supplier]
UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ... [Information of the supplier]
The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and ... [Information of the supplier]
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