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Database Guide

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The Biological Biochemical Image Database is a searchable database of images of putative biological pathways, macromolecular structures, gene families, and cellular relationships. It is of use to those who are working with large sets of genes or proteins using cDNA arrays, functional genomics, or proteomics. [Information of the supplier]
bbid.grc.nia.nih.gov/
The purpose of the BioSamples database is to provide unified storage and access to information about biological samples. These samples may have investigation information stored in other databases (e.g. sequencing, structure, expression). Physical samples may also be available for further study from ... [Information of the supplier]
www.ebi.ac.uk/biosamples/
Cell Circuits is an open-access database of molecular network models that: (a) Bridges the gap between databases of individual pair-wise molecular interactions and databases of validated pathways. (b) Contains functional network hypothesis produced by algorithms that screen molecular interaction networks ... [Information of the supplier, modified]
www.cellcircuits.org/
ChemMine is a compound mining database that facilitates drug and agrochemical discovery and chemical genomics screens. Its web service is divided into three major functional components: (1) Compound Database, comprising Annotation Search and Structure Search; (2) Cheminformatics Workbench; and (3) ... [Information of the supplier, modified]
chemmine.ucr.edu/
EBIMed is a web application that combines Information Retrieval and Extraction from Medline. EBIMed finds Medline abstracts in the same way PubMed does. Then it goes a step beyond and analyses them to offer a complete overview on associations between UniProt protein/gene names, GO annotations, Drugs and ... [Information of the supplier, modified]
www.ebi.ac.uk/Rebholz-srv/ebimed/
We present the Homo Sapiens Comprehensive Model Collection (HOCOMOCO) of transcription factor (TF) binding models obtained by careful integration of data from different sources. HOCOMOCO contains 426 non-redundant curated binding models for 401 human TFs. [Information of the supplier]
autosome.ru/HOCOMOCO/
Today, vast amounts of protein-small molecule binding sites can be found in the Protein Data Bank (PDB). Exhaustive comparison of them is computationally demanding, but useful in the prediction of protein functions and drug discovery. We proposed a tremendously fast algorithm called "SketchSort" that ... [Information of the supplier]
possum.cbrc.jp/PoSSuM/
Rhea is a reaction database, where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest) which provides detailed information about structure, formula and charge. Rhea provides built-in validations that ensure both elemental and ... [Information of the supplier]
www.ebi.ac.uk/rhea/
The Structural Genomics Consortium (SGC) is a not-for-profit organization that aims to determine the three dimensional structures of proteins of medical relevance, and place them in the public domain without restriction. The SGC operates out of the Universities of Oxford and Toronto and Karolinska ... [Information of the supplier]
www.sgc.utoronto.ca/sgc-webpages/sgc-structures.php
The European Bioinformatics Institute (EBI) is home to a number of bioinformatics resources that hold data relevant to the biomedical field, and is thus in a unique position to enhance the annotation of biological data by cross-referencing and mapping between resources. The "Structure Integration with ... [Information of the supplier]
www.ebi.ac.uk/pdbe/docs/sifts/
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